Part:BBa_J61209
[SpecR][OriTr][TnP]
Intermediate for construction of a transposon with a plasmid bearing a spectinomycin resistance marker (see transposon/plasmid 2 below).
This part is used in a project to assemble two different transposons on suicide plasmids.
Transposon/Plasmid 1
The first transposon/plasmid combination has a smaller transposable element which includes a spectinomicin resistance marker, a promoterless gentimicin marker (for selection of transposons that land inside a transcribed region), and a T7 promoter to help determine the region that the transposon inserted into. The rest of the plasmid contains a chloramphenicol resistance marker, a tranposase generating casette, an origin of transfer, and a conditional origin of replication (see box below about construction of transposon plasmids).
Preliminary experiments suggest that the suicide plasmid delivers the transposon with moderate efficiency, but that the ribosome binding site on the gentimicin gene is too weak to confer resistance from genomic transcription.
Transposon/Plasmid 2
The second transposon/plasmid combination has a larger transposable element which includes a chloramphenicol resistance marker, a promoterless gentimicin marker (for selection of transposons that land inside a transcribed region), and conditional origin of replication, and a T7 promoter. The FRT sites are an artifact of construction, and don't have any function in this case. Moving the origin of replication inside the transposon can greatly ease the process of decoding where the transposon inserted. The rest of the plasmid contains a spectinomycin resistance marker, a tranposase generating casette, and an origin of transfer.
Preliminary experiments suggest that the transposon is delivered with very poor efficiency, perhaps as a consequence of its significant size.
This part belongs to a family useful for the construction of transposons and knockin cassettes.
FRT The FRT sequence is the recombination substrate for Flp recombinase. Like the Cre/Lox system, sequences flanked by FRT sites oriented in the same direction get excised by expression of Flp. Cassettes flanked by FRT allow the introduction of selectable markers into the genome followed by subsequent removal by the recombinase.
Tn5 The two Tn5 elements are the substrates for the Tnp transposase in both orientations. Sequences flanked by the two Tn5 elements (in opposing orientation) are mobilizable elements. In the presence of Tnp, they are excised from their plasmid and introduced randomly into the genome or plasmids present in the cell.
Tnp The gene for a high-activity mutant of Tn5 transposase.
OriTr Special strains of E. coli with remnants of the RP4 plasmid, including Rlambda (part ) and BW20767, can transfer plasmids with oriTr (part J01003) to diverse species of bacteria.
OriTf Special strains of E. coli with remanants of the F plasmid, such as J23055, can transfer plasmids with oriTf (part J01002) to other E. coli.
R6K A conditional origin of transfer requiring the pir gene expressed in trans.
Construction of Transposon Plasmids
Transposition mutagenesis is usually carried out by mating a donor strain containing a transposon on a plasmid into a recipient strain. The plasmid with the transposon and transposase transfers to the recipient strain, the transposon is excised from the plasmid, and inserts randomly into the genome. A selectable marker in the transposon and in the recipient strain allows selection of cells receiving the transposon over both the donor and recipient strain.
Construction of the transposon donor strain requires a conjugative donor strain harboring a plasmid with the following elements:
- A conjugative origin of transfer
- A conditional origin of replication, usually R6K, so that the plasmids cannot replicate within the recipient strain (so no second origin of replication)
- A transposon containing a selectable marker flanked by Tn5 ends
- The transposase gene
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 2160
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 2495
Illegal PstI site found at 2160
Illegal NotI site found at 2073 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 2995
Illegal XhoI site found at 1965 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 2160
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 2160
Illegal NgoMIV site found at 185
Illegal NgoMIV site found at 1013
Illegal NgoMIV site found at 1023
Illegal NgoMIV site found at 1348
Illegal AgeI site found at 2483 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 2627
Illegal BsaI.rc site found at 2448
Illegal SapI site found at 915
Illegal SapI site found at 1584
Illegal SapI.rc site found at 1896
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